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1

Aggregation of Fillers Blended into Random Elastomeric Networks: Theory and Comparison with Experiments

Mustafa M. Demir, Yusuf Z. Menceloglu, Burak Erman

Journal:

Macromolecular Chemistry and Physics

Year:

2006

Language:

english

File:

PDF, 205 KB

english, 2006

2

Swelling of sodium chloride filled polybutadiene networks in water, water/ acetone and water/THF mixtures

Seda Erdal, Ivet Bahar, Burak Erman

Journal:

Year:

1998

Language:

english

File:

PDF, 711 KB

english, 1998

3

Main-Chain Lyotropic Liquid-Crystalline Elastomers. 1. Syntheses of Cross-Linked Polyisocyanate Gels Acquiring Liquid-Crystalline Behavior in the Swollen State

Zhao, Wenyan, Kloczkowski, Andrzej, Mark, James E., Erman, Burak, Bahar, Ivet

Journal:

Year:

1996

Language:

english

File:

PDF, 568 KB

english, 1996

4

Main-Chain Lyotropic Liquid-Crystalline Elastomers. 2. Orientation and Mechanical Properties of Polyisocyanate Films

Zhao, Wenyan, Kloczkowski, Andrzej, Mark, James E., Erman, Burak, Bahar, Ivet

Journal:

Year:

1996

Language:

english

File:

PDF, 543 KB

english, 1996

5

[IEEE 2013 IEEE/ACM International Conference on Computer-Aided Design (ICCAD) - San Jose, CA, USA (2013.11.18-2013.11.21)] 2013 IEEE/ACM International Conference on Computer-Aided Design (ICCAD) - Simulation of temporal stochastic phenomena in electronic and biological systems: A comparative review, examples and synergies

Demir, Alper, Erman, Burak

Year:

2013

Language:

english

File:

PDF, 688 KB

english, 2013

6

Engineering molecular machines

Journal:

New Journal of Physics

Year:

2016

Language:

english

File:

PDF, 250 KB

english, 2016

7

A Computational Model for Controlling Conformational Cooperativity and Function in Proteins

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.67 MB

english, 2018

8

Understanding the recognition of protein structural classes by amino acid composition

Ivet Bahar, Ali Rana Atilgan, Robert L. Jernigan, Burak Erman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 181 KB

english, 1997

9

The elastic net algorithm and protein structure prediction

Keith D. Ball, Burak Erman, Ken A. Dill

Journal:

Journal of Computational Chemistry

Year:

2002

Language:

english

File:

PDF, 218 KB

english, 2002

10

Computer simulations of two-dimensional trifunctional bimodal networks

Gokhan Sakrak, Ivet Bahar, Burak Erman

Journal:

Macromolecular Theory and Simulations

Year:

1994

Language:

english

File:

PDF, 467 KB

english, 1994

11

A simple derivation of the exponent γ for Gaussian chains with excluded volume

Andrzej Kloczkowski, James E. Mark, Burak Erman

Journal:

Macromolecular Theory and Simulations

Year:

1995

Language:

english

File:

PDF, 286 KB

english, 1995

12

Orientation and anisotropy of dangling chains in a deformed network

Burak Erman, Jean-Pierre Queslel, Lucien Monnerie

Journal:

Year:

1988

Language:

english

File:

PDF, 332 KB

english, 1988

13

Orientation of flexible probes dissolved in deformed networks

Jean-Pierre Queslel, Burak Erman, Lucien Monnerie

Journal:

Year:

1988

Language:

english

File:

PDF, 397 KB

english, 1988

14

Effect of flow on solutions of rod-coil block co-polymers

Sezen Curgul, Burak Erman

Journal:

Year:

2005

Language:

english

File:

PDF, 158 KB

english, 2005

15

Effect of filler amount on thermoelastic properties of poly(dimethylsiloxane) networks

Mustafa M. Demir, Yusuf Z. Menceloglu, Burak Erman

Journal:

Year:

2005

Language:

english

File:

PDF, 339 KB

english, 2005

16

Long time stress relaxation of amorphous networks under uniaxial tension: The Dynamic Constrained Junction Model

Haluk Konyali, Yusuf Menceloglu, Burak Erman

Journal:

Year:

2008

Language:

english

File:

PDF, 904 KB

english, 2008

17

Collective deformations in proteins determined by a mode analysis of molecular dynamics trajectories

Pemra Doruker, Ivet Bahar, Canan Baysal, Burak Erman

Journal:

Year:

2002

Language:

english

File:

PDF, 260 KB

english, 2002

18

Elasticity of real networks: Comparison of molecular theory with experiments

Journal:

Polymer International

Year:

1985

Language:

english

File:

PDF, 321 KB

english, 1985

19

Rubber elasticity in the range of small uniaxial tensions and compressions. Results for poly(dimethylsiloxane)

Burak Erman, Paul J. Flory

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

1978

Language:

english

File:

PDF, 406 KB

english, 1978

20

Effect of junction constraints on rubber elasticity in multiaxial states of stress

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

1981

Language:

english

File:

PDF, 329 KB

english, 1981

21

Nonhomogeneous state of stress, strain, and swelling in amorphous polymer networks

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

1983

Language:

english

File:

PDF, 621 KB

english, 1983

22

Silicone networks with junctions of high functionality and the theory of rubber elasticity

Paul J. Flory, Burak Erman

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

1984

Language:

english

File:

PDF, 413 KB

english, 1984

23

Effect of flow on solutions of rodlike molecules

Ivet Bahar, Burak Erman

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

1986

Language:

english

File:

PDF, 460 KB

english, 1986

24

Mechanical instability of amorphous polymeric networks: Asymmetric deformation under symmetric biaxial tension

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

1988

Language:

english

File:

PDF, 420 KB

english, 1988

25

Relationships between unfolded configurations of proteins and dynamics of folding to the native state

Attila Gursoy, Ozlem Keskin, Metin Turkay, Burak Erman

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

2006

Language:

english

File:

PDF, 433 KB

english, 2006

26

Identification of kinetically hot residues in proteins

Melik C. Demirel, Ali Rana Atilgan, Ivet Bahar, Robert L. Jernigan, Burak Erman

Journal:

Protein Science

Year:

1998

Language:

english

File:

PDF, 3.79 MB

english, 1998

27

Structural cooperativity in histone H3 tail modifications

Deniz Sanli, Ozlem Keskin, Attila Gursoy, Burak Erman

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 639 KB

english, 2011

28

Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins

Lerzan Ormeci, Attila Gursoy, Guzin Tunca, Burak Erman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 309 KB

english, 2007

29

Free radical crosslinking of unsaturated bacterial polyesters obtained from soybean oily acids

Baki Hazer, Songun I. Demirel, Mehlika Borcakli, Mehmet S. Eroglu, Miko Cakmak, Burak Erman

Journal:

Polymer Bulletin

Year:

2001

Language:

english

File:

PDF, 80 KB

english, 2001

30

Correction to the solution of orthotropic circular plates

Walid H. Rimawi, Burak Erman

Journal:

Building Science

Year:

1972

Language:

english

File:

PDF, 235 KB

english, 1972

31

Orientational mobility in uniaxially deformed polymer chains: a Brownian dynamics simulation study

Turkan Haliloglu, Burak Erman, Ivet Bahar

Journal:

Year:

1993

Language:

english

File:

PDF, 228 KB

english, 1993

32

Configurational properties of polypyrrole chains

Ersin Yurtsever, Burak Erman

Journal:

Year:

1993

Language:

english

File:

PDF, 538 KB

english, 1993

33

Dynamics of large-scale fluctuations in native proteins. Analysis based on harmonic inter-residue potentials and random external noise

Albert Erkip, Burak Erman

Journal:

Year:

2004

Language:

english

File:

PDF, 467 KB

english, 2004

34

Control of optical anisotropy at large deformations in PMMA/chlorinated-PHB (PHB-Cl) blends: Mechano-optical behavior

Baris Yalcin, Mukerrem Cakmak, Ali Hakan Arkın, Baki Hazer, Burak Erman

Journal:

Year:

2006

Language:

english

File:

PDF, 1.05 MB

english, 2006

35

Parameter optimization for the Gaussian model of protein folding

Albert Erkip, Burak Erman, Chaok Seok, Ken Dill

Journal:

Year:

2002

Language:

english

File:

PDF, 1005 KB

english, 2002

36

Palladium Nanoparticles by Electrospinning from Poly(acrylonitrile-co-acrylic acid)−PdCl2 Solutions. Relations between Preparation Conditions, Particle Size, and Catalytic Activity

Erman, Burak, Abramchuk, Sergei S., Makhaeva, Elena E., Khokhlov, Alexei R., Matveeva, Valentina G., Sulman, Mikhail G., Demir, Mustafa M., Gulgun, Mehmet A., Menceloglu, Yusuf Z.

Journal:

Year:

2004

Language:

english

File:

PDF, 338 KB

english, 2004

37

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

Ivet Bahar, Ali Rana Atilgan, Burak Erman

Journal:

Folding and Design

Year:

1997

Language:

english

File:

PDF, 142 KB

english, 1997

38

Quasi-harmonic fluctuations of two bound peptides

Mert Gur, Burak Erman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 289 KB

english, 2012

39

Collective Motions in HIV-1 Reverse Transcriptase: Examination of Flexibility and Enzyme Function

Ivet Bahar, Burak Erman, Robert L. Jernigan, Ali Rana Atilgan, David G. Covell

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 497 KB

english, 1999

40

Advances in constraint theories of rubber-like elasticity of polymers

Journal:

Current Opinion in Solid State & Materials Science

Year:

2010

Language:

english

File:

PDF, 148 KB

english, 2010

41

Gaussian Dynamics of Folded Proteins

Haliloglu, Turkan, Bahar, Ivet, Erman, Burak

Journal:

Physical Review Letters

Year:

1997

Language:

english

File:

PDF, 129 KB

english, 1997

42

Analysis of Multiple Folding Routes of Proteins by a Coarse-Grained Dynamics Model

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 354 KB

english, 2001

43

The Gaussian Network Model: Precise Predictions of Residue Fluctuations and Application to Binding Problems

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 338 KB

english, 2006

44

Statistical thermodynamics of residue fluctuations in native proteins

Yogurtcu, Osman N., Gur, Mert, Erman, Burak

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 717 KB

english, 2009

45

Quasi-harmonic analysis of mode coupling in fluctuating native proteins

Gur, Mert, Erman, Burak

Journal:

Physical Biology

Year:

2010

Language:

english

File:

PDF, 1.47 MB

english, 2010

46

Analysis of Correlations between Energy and Residue Fluctuations in Native Proteins and Determination of Specific Sites for Binding

Haliloglu, Turkan, Erman, Burak

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 236 KB

english, 2009

47

Prediction of Binding Sites in Receptor-Ligand Complexes with the Gaussian Network Model

Haliloglu, Turkan, Seyrek, Emek, Erman, Burak

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 324 KB

english, 2008

48

Novel High-Performance Materials from Starch. 2. Orientation and Mechanical Properties of Lightly Cross-Linked Starch−Ether Films

Zhao, Wenyan, Kloczkowski, Andrzej, Mark, James E., Erman, Burak

Journal:

Chemistry of Materials

Year:

1998

Language:

english

File:

PDF, 178 KB

english, 1998

49

Computational and experimental investigation of DNA repair protein photolyase interactions with low molecular weight drugs

Azizoğlu, Selimcan, Kizilel, Riza, Marušič, Maja, Kavakli, Ibrahim Halil, Erman, Burak, Kizilel, Seda

Journal:

Journal of Molecular Recognition

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

50

Theory of elasticity of polymer networks. II. The effect of geometric constraints on junctions

Erman, Burak, Flory, Paul J.

Journal:

The Journal of Chemical Physics

Year:

1978

Language:

english

File:

PDF, 683 KB

english, 1978

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